bmorphism-interactome

plurigrid's avatarfrom plurigrid

GitHub interactome explorer for bmorphism/plurigrid ecosystem. Maps collaborations across AlgebraicJulia, Topos Institute, Anthropic, and MCP servers. Use for discovering cobordisms between research communities.

⭐1stars🔀2forks📁View on GitHub🕐Updated Jan 9, 2026
[Academic Research]

When & Why to Use This Skill

The bmorphism-interactome skill is a specialized GitHub network exploration tool designed to map complex collaborations within the plurigrid and bmorphism ecosystems. It enables users to discover 'cobordisms'—deep connections and bridges—between research communities such as AlgebraicJulia, Topos Institute, and Anthropic. By analyzing shared contributors, repository forks, and organizational structures, this skill provides a high-level overview of the intersection between Applied Category Theory, Julia scientific computing, and the Model Context Protocol (MCP) landscape.

Use Cases

  • Community Mapping: Identifying influential contributors who act as bridges between different research organizations like Topos Institute and AlgebraicJulia.
  • Ecosystem Discovery: Navigating the plurigrid repository network to find specialized tools in categorical GIS, cybernetic systems, and distributed MCP servers.
  • Collaboration Analysis: Using automated GitHub API queries to find shared contributors between specific high-impact repositories to understand the cross-pollination of technical ideas.
  • Technical Lineage Tracking: Analyzing the evolution of forks (e.g., UnwiringDiagrams.jl) to see how research concepts from one community are adapted for new applications in another.
namebmorphism-interactome
descriptionGitHub interactome explorer for bmorphism/plurigrid ecosystem. Maps collaborations across AlgebraicJulia, Topos Institute, Anthropic, and MCP servers. Use for discovering cobordisms between research communities.
version1.0.0

bmorphism-interactome Skill

Mapping the cobordisms between research communities via shared contributors

Profile: bmorphism (Barton Rhodes)

@bmorphism | 255 followers | 1.6k following
@plurigrid founder | San Francisco
"Parametrised optics model cybernetic systems"

Core Repositories

Repo Stars Description Trit
Gay.jl 3 Wide-gamut color sampling + SPI 0
agent-o-shiva - Rama agent platform fork 0
GeoACSets.jl - Categorical GIS 0
bafishka 1 Fish + Steel Clojure -1
ocaml-mcp-sdk 60 OCaml MCP SDK -1
babashka-mcp-server 16 Babashka MCP -1
multiverse-color-game - VisionPro holographic +1

Plurigrid Organization (542 repos)

plurigrid: "building for a more agentic mesoscale 🦆"
├── asi/                    # "everything is topological chemputer!"
├── UnwiringDiagrams.jl     # Worlding/Unworlding Uexküll
├── vcg-auction/            # VCG auctions in Rust
├── microworlds/            # Agent simulations
├── risc0-cosmwasm/         # zkVM + CosmWasm
└── skillz/                 # Anthropic skills fork

Interactome Clusters

Cluster 1: Topos Institute ↔ AlgebraicJulia

Bridge Authors:

  • olynch - poly, Catlab.jl, ACSets.jl
  • epatters - Catlab lead, Topos
  • kasbah - Senior engineer @ Topos

Cobordism:

plurigrid/UnwiringDiagrams.jl ←fork← AlgebraicJulia/WiringDiagrams.jl
           ↓                                    ↓
    "Umwelt Worlding"                   Compositional Systems
           ↓                                    ↓
      Gay.jl SPI ←───────────────────→ ToposInstitute/poly

Cluster 2: Anthropic Engineers

bmorphism follows:

  • klazuka (Keith Lazuka)
  • simonster (Simon Kornblith)
  • domdomegg (adam jones)
  • ericharmeling

Cluster 3: Julia Scientific

  • ViralBShah - Julia co-creator, JuliaHub CEO
  • EnzymeAD - Automatic differentiation
  • gdalle - SparseMatrixColorings.jl
  • andyferris - ElaraAI

Cluster 4: Emacs/Clojure

  • fogus - Cognitect/Nubank
  • Chouser - Clojure core
  • tvraman - Emacspeak
  • ept (Martin Kleppmann) - DDIA author, CRDTs

Cluster 5: Applied Category Theory

  • jules-hedges - Open games, parametrised optics
  • statebox - awesome-applied-ct
  • AlgebraicJulia - Catlab ecosystem

Commands

# Explore following list
gh api users/bmorphism/following --paginate --jq '.[].login'

# Get repo details
gh api repos/bmorphism/Gay.jl --jq '{stars: .stargazers_count, desc: .description}'

# Find shared contributors
gh api repos/AlgebraicJulia/Catlab.jl/contributors --jq '.[].login' > catlab_contribs.txt
gh api repos/ToposInstitute/poly/contributors --jq '.[].login' > poly_contribs.txt
comm -12 <(sort catlab_contribs.txt) <(sort poly_contribs.txt)

# Plurigrid repos by language
gh api orgs/plurigrid/repos --paginate --jq '.[] | select(.language == "Julia") | .name'

GF(3) Classification

Trit Role Repos
-1 (MINUS) Infrastructure MCP servers, bafishka, CategoricalTowers
0 (ERGODIC) Bridges Gay.jl, GeoACSets, agent-o-shiva
+1 (PLUS) Applications multiverse-color-game, gay-hy, xf.jl

Key Insights

  1. Parametrised Optics - bmorphism's bio references jules-hedges' work on cybernetic systems
  2. Topological Chemputer - plurigrid/asi connects Cronin's chemputer to categorical systems
  3. UnwiringDiagrams - Fork of AlgebraicJulia for "Uexküll Umweltung" (environment-world)
  4. MCP Constellation - Multiple MCP servers forming distributed tool network
  • gh-interactome - General GitHub network discovery
  • bmorphism-stars - 2155 starred repos index
  • gay-julia - Gay.jl color integration
  • topos-catcolab - CatColab collaboration
  • acsets-algebraic-databases - ACSets patterns

Scientific Skill Interleaving

This skill connects to the K-Dense-AI/claude-scientific-skills ecosystem:

Graph Theory

  • networkx [○] via bicomodule

Bibliography References

  • general: 734 citations in bib.duckdb

Cat# Integration

This skill maps to Cat# = Comod(P) as a bicomodule in the equipment structure:

Trit: 0 (ERGODIC)
Home: Prof
Poly Op: ⊗
Kan Role: Adj
Color: #26D826

GF(3) Naturality

The skill participates in triads satisfying:

(-1) + (0) + (+1) ≡ 0 (mod 3)

This ensures compositional coherence in the Cat# equipment structure.