🎓Academic Research Skills
Browse skills in the Academic Research category.
socratic
소크라테스식 자문자답 - ultrathink 심층 분석 후 brainstorm 에이전트와 Q&A로 정제
volcanic-check
Check if a speleothem anomaly correlates with volcanic eruptions. Use when ruling out volcanic false positives, checking eVolv2k/VSSI records, or validating seismic interpretations. Triggers on "volcanic check", "eruption correlation", "rule out volcanic", "eVolv2k".
scholarly-edition
Create a DOI-ready scholarly edition of a translated book. Use when asked to publish, create an edition, mint a DOI, or prepare a book for scholarly publication. Generates front matter, creates versioned editions, builds EPUBs, and mints DOIs via Zenodo.
book-biography
Bibliographic research agent for analyzing books and manuscripts. Builds comprehensive "book biographies" showing production context, textual transmission, related editions, and scholarly networks. Use when asked to research a book's history, find related editions, analyze manuscript transmission, or build bibliographic context.
paper-structure
Paper structure, LaTeX conventions, and citation format for this research project
scientific-method
Research methodology for hypothesis testing, evidence evaluation, and verification standards in geoscience research. Use when designing experiments, formulating hypotheses, or evaluating evidence quality.
source-research
Search and cite primary sources from Source Library. Use when asked what historical authors wrote, to find quotes from old texts, investigate alchemical or philosophical works, or cite translated Latin/German sources.
statistics
Geostatistics, uncertainty quantification, and time series analysis for paleoseismic research. Use for z-score analysis, Monte Carlo dating uncertainty, spatial clustering, and recurrence statistics.
paper-writing
Scientific manuscript preparation for geoscience journals. Includes IMRAD structure, journal styles (Nature, EPSL, GSA), citation formatting, figure standards, and supplementary materials.
curator
Autonomous curator for Source Library. Discover, evaluate, and import historical texts from digital archives (Archive.org, Gallica, MDZ). Use for acquisition sessions, collection gap analysis, or building thematic batches of Western esoteric tradition texts.
zscore
Calculate z-scores for speleothem geochemical data. Use when analyzing cave isotope anomalies, finding significant deviations, or identifying potential earthquake signals. Triggers on "zscore", "calculate z", "anomaly analysis", "find anomalies".
validate-cave
Test speleothem earthquake detection against modern earthquake catalogs. Use when validating methodology, checking if cave detects known earthquakes, building validation matrix. Triggers on "validate cave", "test detection", "modern earthquake validation", "blind test".
dem-pipeline
Run DEM lineament analysis to identify unmapped fault structures. Use when visually confirming orphan earthquake clusters, mapping fault extensions, or finding dark earthquake sources. Triggers on "DEM analysis", "lineament", "edge detection", "drainage analysis".
orphan-analysis
Identify orphan earthquakes far from mapped faults that indicate unmapped active structures. Use when analyzing microseismicity, finding dark earthquake source faults, or validating fault database gaps. Triggers on "orphan analysis", "unmapped fault", "microseismicity", "fault gap".
sync-paper
Synchronize paleoseismic research documents to ensure consistency. Use when checking if catalogs match paper, finding documentation drift, or updating summaries. Triggers on "sync paper", "check consistency", "document sync", "update catalog".
classify-anomaly
Classify speleothem anomalies as seismic, climatic, volcanic, or compound events. Use when discriminating earthquake signals from climate/volcanic false positives. Triggers on "classify anomaly", "seismic or climatic", "discrimination", "is this an earthquake".
literature-review
Academic research synthesis, paper analysis, and comprehensive literature reviews across disciplines
scientific-writing
Write rigorous scientific manuscripts, research papers, grant proposals, and literature reviews. Use when drafting or revising any part of a scientific document including abstracts, introductions, methods, results, and discussions. Applies IMRAD structure, citation styles (APA/AMA/Vancouver/IEEE), reporting guidelines (CONSORT/STROBE/PRISMA), and publication standards. Triggers on requests to write research papers, journal articles, scientific reports, academic manuscripts, grant applications, or improve scientific prose.
tar-umt-academic-writing
Academic writing assistance for TAR UMT students focusing on APA referencing, plagiarism prevention, and Turnitin report interpretation. Use when students need help with (1) formatting APA citations and references, (2) avoiding plagiarism through proper paraphrasing and citing, (3) understanding Turnitin similarity scores, (4) learning TAR UMT's academic integrity policies, or (5) preparing assignments that meet university standards.
peer-reviewer
Conduct thorough peer reviews of academic and technical documents
protocol-io-download
Download protocols from protocols.io with given procotol id. And save them as organized markdown files include steps, materials, and comments. Also save the images in the protocol folder.
crossvit-covid19-fyp
Complete context for TAR UMT Data Science FYP implementing CrossViT for COVID-19 chest X-ray classification. Use when working on Jupyter notebooks, code implementation, data analysis, model training, or any task related to Tan Ming Kai's final year project. This skill provides dataset specs, model architecture details, hardware constraints (NVIDIA RTX 6000 Ada Generation (51GB VRAM) VRAM), preprocessing parameters, baseline models, evaluation metrics, hypotheses, and coding guidelines for reproducible research following TAR UMT academic requirements.
stimuli-exp-design
从心理学/认知科学论文原文、论文中的刺激插图(<workspace>/paper/...)、实验数据与参考代码(<workspace>/data/...)中，抽取复现实验所需的全部实现信息，生成严格可追溯、可核验引用的 exp_design.md；输出必须以 stimkit 为唯一刺激实现框架来表述参数、坐标、形状与渲染逻辑，并包含 Evidence Index、Fact Ledger、trial 流程、条件枚举、随机化/反平衡规则、数据字段↔实现参数映射。
stimuli-reproducibility-check
验证一个心理学论文的实验中使用的刺激是否可复现。在开始处理一个心理学论文原始刺激的代码复现工作时，使用这个技能来检验论文是否满足复现要求。
dsr
Design Science Research Methodology for rigorous artifact development. Use this skill when:(1) Creating new tools, frameworks, or systems that solve real problems(2) Need structured approach to build-evaluate-iterate cycles(3) Want scientific rigor in development process(4) Evaluating artifacts against clear criteria(5) Documenting research contributions systematicallyBased on Hevner et al. (2004) and Peffers et al. (2007) - foundational DSR papers.
citation-manager
Manage bibliographies, citations, and academic references in multiple formats
research-voids
Research voids (cognitive gaps, unchartable territories). Daily. Outputs research notes for voids articles.
academic-writing
Academic writing assistant for power systems and quantum computing research papers. Helps write IEEE-style papers, including abstract, introduction (with literature review), methodology, case studies, results, and conclusions. Addresses specific writing issues like verbose sentences, overclaiming, inconsistent abbreviations, and gap-literature logic mismatches.
citation-management
DOI转BibTeX、文献搜索、元数据提取、引用验证。用于论文引用管理。
conference-paper-writer
Write academic conference papers and research submissions
tar-umt-fyp-rds
Comprehensive guide for TAR UMT Data Science (RDS) students completing their Final Year Project. Use when RDS students need help with (1) understanding FYP processes and requirements, (2) structuring FYP reports and deliverables, (3) writing research-based chapters and thesis, (4) selecting appropriate data science projects, (5) understanding research methodology and theoretical frameworks, (6) conducting experiments and statistical analysis, (7) preparing for system testing and presentations, (8) meeting submission deadlines and formats, (9) report formatting and structure requirements, or (10) any other FYP-related guidance specific to Data Science students at TAR UMT.
research-synthesizer
Synthesize insights from multiple research sources into cohesive analysis
cardiology-trial-editorial
Identify landmark cardiology trials and write evidence-based editorials in Eric Topol's authoritative Ground Truths style. Use when the user wants to: (1) Discover and evaluate recent important trials from top cardiology journals (NEJM, JACC, Lancet, EHJ, Circulation), (2) Assess trial importance using systematic scoring, (3) Write 500-word editorials on cardiology/interventional cardiology advances for physician audiences, (4) Create thought leadership content that demonstrates deep domain expertise. Supports both full-text and abstract-only scenarios with PubMed integration for references.
academic-chapter-writer
Comprehensive academic textbook chapter writing system for medical/scientific content. Use when the user wants to: (1) Write a full textbook chapter (5,000-15,000 words) on any medical/scientific topic, (2) Generate a detailed table of contents with section word counts, (3) Research topics via PubMed MCP and compile 20-30 references, (4) Write section-by-section with proper citations in Vancouver format, (5) Create publishable academic content with Eric Topol-inspired voice and authentic human prose, (6) Get approval at TOC stage before writing begins, (7) Export well-structured chapters for textbook publication.
iterative-analysis
Performs sequential multi-round oracle analysis where each round builds on previous findings. Use when user specifies analysis count (e.g., "analyze 5 times"), asks to think repeatedly, or needs progressive refinement.
searching-academic-outputs-with-dimensions
Search for academic literature, empirical evidence, and scholarly research using the Dimensions database. Use when seeking research papers to support product decisions, find empirical studies, conduct literature reviews, explore funding patterns, validate hypotheses with academic sources, or discover research trends. Supports publications, grants, patents, clinical trials, and researcher profiles. Triggers on requests for "academic evidence", "empirical research", "find studies", "literature search", or "research to support decisions".
deep-researcher
Performs comprehensive, multi-layered research on any topic with structured analysis and synthesis of information from multiple sources. Uses file-based research tracking, parallel investigation threads, and context-efficient patterns for deep investigations. ALL MEDICAL CITATIONS FROM PUBMED MCP ONLY.
parallel-literature-search
Parallel search across PubMed, Perplexity, and your knowledge base. Searches all sources simultaneously and synthesizes findings with citations. Faster evidence gathering for clinical questions.
meta-analysis-fundamentals
Teach the foundational concepts of meta-analysis including effect sizes, statistical models, and evidence synthesis. Use when users ask about meta-analysis basics, want to understand pooled effects, or need guidance on fixed vs random effects models.
publication-bias-detection
Detect and assess publication bias in meta-analysis using funnel plots, Egger's test, trim-and-fill, and selection models. Use when users need to evaluate whether missing studies might affect their conclusions.
diagnostic-meta-analysis
Teach meta-analysis of diagnostic test accuracy studies including sensitivity, specificity, SROC curves, and bivariate models. Use when users need to synthesize diagnostic accuracy data, understand SROC curves, or assess quality with QUADAS-2.
grade-assessment
Apply the GRADE framework to assess certainty of evidence in systematic reviews. Use when users need to rate evidence quality, create Summary of Findings tables, or understand the factors that affect confidence in effect estimates.
heterogeneity-analysis
Assess and interpret between-study heterogeneity in meta-analysis using I², Q statistic, tau², and prediction intervals. Use when users need to evaluate consistency across studies, understand sources of variation, or decide if pooling is appropriate.
research-topic
Research a philosophical topic using web search. Outputs research notes, not finished content.
forest-plot-creation
Generate and interpret forest plots for meta-analysis visualization using R and the metafor package. Use when users need to create forest plots, understand visual representation of pooled effects, or interpret study weights and confidence intervals.
bayesian-meta-analysis
Teach Bayesian approaches to meta-analysis including prior specification, MCMC methods, and interpretation of posterior distributions. Use when users want to incorporate prior knowledge, need probabilistic interpretations, or are working with sparse data.
research-intelligence
Extract insights, analyze claims, and synthesize knowledge from research content. Use when processing academic papers, articles, podcasts, videos, meeting transcripts, or any content where the goal is to extract wisdom, analyze arguments, summarize findings, or compile references. Triggers include "analyze this paper", "extract key insights", "summarize the research", "what are the main claims", "extract wisdom from", "compile references", "critique this argument".
iiif
Work with IIIF manifests and the Wellcome Collection API. Use this skill to download manifests, extract metadata, or process canvases. Invoke with /iiif.
writer
Draft scientific research manuscripts from research data. Use when user wants to write a research paper, has a project folder with papers, data, figures, and a GitHub repository link. Orchestrates context-ingestion, scoping, literature-review, code-analyzer, results-interpreter, synthesis, and assembler sub-skills.
research-lookup
Look up current research information using Perplexity's Sonar Pro Search or Sonar Reasoning Pro models through OpenRouter. Automatically selects the best model based on query complexity. Search academic papers, recent studies, technical documentation, and general research information with citations.